Scaffold Ga0211643_10007715

Overview

Basic Information

• Taxon OID: 3300020457
• Scaffold ID: Ga0211643_10007715
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5894
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_110
• Coordinates
  • Lat. (^o): -1.8505
  • Long. (^o): -84.6318
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002360	Metagenome / Metatranscriptome	567	Y
F019133	Metagenome	231	Y
F090269	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211643_1000771512	F002360	GGAG	MPEPIGENTFLKLREQRDQARLECDQVKIQRDIALRKLNKALNIAKDLRKLIENGKET
Ga0211643_1000771514	F090269	N/A	MCKYLILLLLSFEGEVIKERLEFTRPMDVYDCMDFGNDHREQIATYDSDKNAWFLNDGRGTFQGFICE
Ga0211643_1000771519	F019133	N/A	MIDEDRTYENEVRFINDRLGVKNNREDNKGNIPLDLASSNTPKIQKEKVDGICLNDDNVCICRG