NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211643_10004845

Scaffold Ga0211643_10004845


Overview

Basic Information
Taxon OID3300020457 Open in IMG/M
Scaffold IDGa0211643_10004845 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7703
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.8505Long. (o)-84.6318Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001918Metagenome617N
F002334Metagenome569N

Sequences

Protein IDFamilyRBSSequence
Ga0211643_100048451F001918N/ADHFAWNSNLKYPDDYDPIADFEERMQPKRLLWEEYPKFDLSGFKMVSQMEFPLEDSVVRQSIFRQKCQWTSVKKSIELVDENFDLVIRMRTDIEFPERVPLEECRGDGLFMMNGAMQAGAGREYCDWFYCGPLNRVKQFNPLVVYDEFYKDGIRHMHELVRQTLAACQIPHKVLDLKAWMTDRSKVK
Ga0211643_100048453F002334GGAMTLGVFHQVHHNLKATEEAIKSFRQFHPKNPYVLIRDGDNGEDFSNIAKEYDCLYLTEEKNLGYRDHNHESGIYGMTKDEVLIWLERFRMACTLCNTDHIIMMEDDVHIRGEIHVPEDWEFAGQAKPGNLLQEPFTDYLTEKYGVQWNVTYYGTGGGSIFNAKTFLENYERVIPIFEEEFDLIKRDMCGNLGWVDVWMPMYFFLCGKEYRHNSLLTETTSNPIWQISKEPIVHQYKVHY
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