Scaffold Ga0211551_10090017

Overview

Basic Information

• Taxon OID: 3300020456
• Scaffold ID: Ga0211551_10090017
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1438
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_148
• Coordinates
  • Lat. (^o): 31.8366
  • Long. (^o): -64.109
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211551_100900173	F018286	AGGAG	MIETVLTTFILLGMVDSHDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGKVFYVVKLHDNQDAVIICQEDAKNERLRERTD
Ga0211551_100900174	F079212	AGGAGG	MKDYEKELIDRCIESHYNMIRNHRRAIVELSRKILKEPEICMECFDIEIKNESR