Scaffold Ga0211664_10497848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211664_10497848

Scaffold Ga0211664_10497848

Overview

Basic Information
Taxon OID	3300020455 Open in IMG/M
Scaffold ID	Ga0211664_10497848 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	557
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9226	Long. (^o)	-96.0932	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050424	Metagenome	145	N
F090413	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211664_104978481	F050424	N/A	IIDTIQKLLKQNLASIPVVFDEHRGQESFLIVPEADAFVDYASNVHIREFTTTINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITNWYGGIVSSVEYTRDEEDETISNVIITFQCNTNEVIS
Ga0211664_104978482	F090413	GAGG	MKYKHIKGLQLQKPSYLNTPNQKIRQLLAGEEVELEKENLEEFESLGVQVQPV

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