Scaffold Ga0211664_10279002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211664_10279002

Scaffold Ga0211664_10279002

Overview

Basic Information
Taxon OID	3300020455 Open in IMG/M
Scaffold ID	Ga0211664_10279002 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	774
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9226	Long. (^o)	-96.0932	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013814	Metagenome / Metatranscriptome	268	Y
F105927	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211664_102790022	F013814	N/A	MFEKLEFQGKMWEVKAKVDGRRLDDSSTLKQNYGCDLVIKNSQNIYFVLNEIIDVEYEEI
Ga0211664_102790023	F105927	GGAG	MKKQNKIKQWYLQYFDWNDDGMTNWWEYLIPFAFILLVEVIAEIIGLFIGKLFF

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