NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211664_10080265

Scaffold Ga0211664_10080265


Overview

Basic Information
Taxon OID3300020455 Open in IMG/M
Scaffold IDGa0211664_10080265 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1535
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9226Long. (o)-96.0932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F008624Metagenome / Metatranscriptome330Y
F060971Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0211664_100802651F060971N/AAIPVCDWENYSELTEHHISHLMHVNQMCILKRDSQQIDYYATMFGHSMKNLEKDN
Ga0211664_100802655F008624N/AMNPQSHRTTEELQGIVKALSSLRLLNTPEEDQRLFDCENELRKRKKEQDFIDAHFQVVVY
Ga0211664_100802656F001419AGGAGMMYEFDGYDEILKCYEGETDQHASTSFEVGLMNELYYQLFREEF

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