Scaffold Ga0211664_10025405

Overview

Basic Information

• Taxon OID: 3300020455
• Scaffold ID: Ga0211664_10025405
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2924
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9226
  • Long. (^o): -96.0932
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F081230	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211664_100254054	F001839	GGA	MKYFEKFDKDIINSQNLNSHEKLIYVICKSFEFAPNGCRISHKYLLRRTGIKTIRTLTKCLDRLTLFGLLARKQINNGTNHYVFEKNQMQEYIQHNLNKRRKIKLAKIKQQQSYIQNNQQNVHILKKGK
Ga0211664_100254056	F081230	N/A	MITARLTTEELDRFLGIASFVDDKLPKPKKPLCVTNFQLLDVSPDKDTYKDSAASPARPRIVPTSRQLSIYDFILMLMMDVKSEQRELIYLRHFPYRSYRQLKRFYIGDSHEKIRYMYFRALVEACEIANKNLKKYL