NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211664_10005268

Scaffold Ga0211664_10005268


Overview

Basic Information
Taxon OID3300020455 Open in IMG/M
Scaffold IDGa0211664_10005268 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7385
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9226Long. (o)-96.0932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005266Metagenome / Metatranscriptome406Y
F093974Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211664_1000526810F093974AGGAGGMVPYKTKFCETCQETTEHFDDRQYAEDNEKWNCIQCMDKQGSDDALDNATYFSDLDEDEGILYDEY
Ga0211664_1000526811F005266AGGMSVHIRYRFYKEKDHYLEDERMTRGYTLVEVDEPTPFHKVLKEFYRDMKHRVKVINIWRTPAGEANYRMEEEERLNGTI

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