Scaffold Ga0211664_10005268

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211664_10005268

Scaffold Ga0211664_10005268

Overview

Basic Information
Taxon OID	3300020455 Open in IMG/M
Scaffold ID	Ga0211664_10005268 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7385
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (82.35%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9226	Long. (^o)	-96.0932	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005266	Metagenome / Metatranscriptome	406	Y
F093974	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211664_1000526810	F093974	AGGAGG	MVPYKTKFCETCQETTEHFDDRQYAEDNEKWNCIQCMDKQGSDDALDNATYFSDLDEDEGILYDEY
Ga0211664_1000526811	F005266	AGG	MSVHIRYRFYKEKDHYLEDERMTRGYTLVEVDEPTPFHKVLKEFYRDMKHRVKVINIWRTPAGEANYRMEEEERLNGTI

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