Scaffold Ga0211664

Basic Information
Taxon OID	3300020455 Open in IMG/M
Scaffold ID	Ga0211664_10003846 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020455 Open in IMG/M

Scaffold ID

Ga0211664_10003846 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8904
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8904

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9226	Long. (^o)	-96.0932	Alt. (m)	Depth (m)	50
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_100

Coordinates

Lat. (^o)

-12.9226

Long. (^o)

-96.0932

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025055	Metagenome	203	Y
F032303	Metagenome	180	N
F043609	Metagenome / Metatranscriptome	156	N
F046625	Metagenome	151	Y
F069319	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211664_1000384610	F069319	GGCGG	MLDSYTFKPSELPKIYRVQIRDIIKDVVDSKTDMYWKNYTKFNIDEQTAISVSCIDHKVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLEQQIDFVEKLNPKFYFISRQRTNTRWLKYYFDTFNKEYNRNLVVNDNQYWVCNGDKEGCVQTIIYPKDMKVSLKQYK
Ga0211664_100038462	F025055	GGAG	MIDIIGDTVKKTFDYKGEDNFAFLKNEVFWLNYLKSKWVPELIEVGNNYVITRYYGPDLIKNKTRPKDLADQTLEMYKFFKEKNVFKLNGALSNMTMNGNQLVAFDWKWAKFRTDKYIDYEIISYEKWLSKIDSELVEKLKCMI
Ga0211664_100038464	F032303	AGG	MIKHIAEIEALDFASKQEHKDKWHKDFYYWKRHLLALKNWPWLKKFYKGGKWLGHFDEELNGVYWYNLQGDEMYDGFLISSKVGVGIKLGRWLEKNIKYKTNWSCCSKQYVKFNERLGFEIKSMDNIEEQEVFLLCRKKY
Ga0211664_100038467	F043609	GGA	MRTDNQEFHNILKSVDFADISDFWSVPYKEILEEVKDIPENKWRKPFDADYKREGLNDLESNIYYPGSKGDLIPARGWRSVTALNETGDYRDQISKFTPVFNTENEYRNKVKEVKENSQWTNISHYLPTLKEFFEDKIFPYMYVGHIYVSALDAGGIVTEHNDIPDDSRPMLESDRVHSFNVLNTFNMVLNHVKSCYSCFNGKILPAYDGAIRWTNTGNQHWVVNMNKESQYQIIWQGLYKKSFRKLVKEKYKYSYDNNQ
Ga0211664_100038469	F046625	GGA	MMLKNLIVKNFLSESELNSFTYDNKEEFKSSSGSLILYYQKLLTSISNKIAKHIGEFSLRDAHIHYLKQPYRLHCDSGKTNNSHYTIIVPLDKEPQGGLYIMNQWADKAYSLDDYYTQDWQSVLSLEERKEKIKEFNSDVSLPDTIDFEHIKDKKGFTVKNYIKYEYNTAVMYPSKFFHCSQNIENFTNKKSLAVFTDVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211664_10003846

Overview

Ecosystem & Geography

Associated Families

Sequences