Scaffold Ga0211548_10000569

Overview

Basic Information

• Taxon OID: 3300020454
• Scaffold ID: Ga0211548_10000569
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16200
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.8591
  • Long. (^o): -37.1728
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F020459	Metagenome	224	N
F100005	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211548_1000056910	F100005	N/A	MVQKHYEKPMPETVTTILEDGRVSVSVGHFTGIVSSMHLIEPKAHQLQKAWLKQQAALIDASN
Ga0211548_1000056918	F006772	AGG	MPRTGRQIVMERLNKAIQTAVTGDLQRAAMFLERAREVRAGCTKQRARSRRAQTNAWKKKVDSPATW
Ga0211548_100005692	F020459	AGG	MSETAEPKKTSVADDESKRWRKGKGAAHRVEERAQAAYTYILEGGTRIEVAQKVVSRFNCSLRTAHDDYKRAMTLLREEQQGTREELLNQIQALRLSTIKRALKRGHYQTVATLLGDMGKVIGEAQPEQIALQVPELFIKVEDK