Scaffold Ga0211550_10351936

Overview

Basic Information

• Taxon OID: 3300020453
• Scaffold ID: Ga0211550_10351936
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 691
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_149
• Coordinates
  • Lat. (^o): 34.0491
  • Long. (^o): -49.8315
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F013522	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211550_103519361	F002249	N/A	KALQHTKIKELQVRMMKWVSWYKDEKIRNRTVDKDKWQHRFTFTLRCQKRAGKLTKGELEQLNHYWKIYEQRTIS
Ga0211550_103519362	F013522	GGA	MNKEQLVKRVEKLLYLCEETEPTTAEMMNMDKIFTEDLIATQNHLYNVKDDNYSLLDIVDMMKECNWIWKKRLKIKEIGWDEYNHIDRKIEESLRAGRKIEAIKTYRKHKIDNGEDCGLKEAKEYIDKLIIKMGID