NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211550_10054227

Scaffold Ga0211550_10054227


Overview

Basic Information
Taxon OID3300020453 Open in IMG/M
Scaffold IDGa0211550_10054227 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1917
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_149
CoordinatesLat. (o)34.0491Long. (o)-49.8315Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003043Metagenome511Y
F013945Metagenome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0211550_100542273F013945N/AMFNLSTQEVVLSIEKSPLKIVRGILYQEYSNFFGNTINLNFGKKENFEKLENQTQLNRLKLRDDDIDLKKLKIFFMNSNITQALEKKFKSKFKFDSVDVWIDGKGYKLSPHVDDPRIKLHLQIYLSNDNEGTSLYDSDGELLYTFPFKANYGYALYNNIYSKHGVEEIEKDGRISLYVRY
Ga0211550_100542274F003043GAGMTILITGGNGNLSNCLKEYIDGDFYGKDMLDLTDRNCIKNLPLYDILIHTATGTNINTNLQLLYSKAKKIFAFTSKRGTFLNWKQADHLEYGIEKLNLNFITYRHNLQNRNAQLFEPGHMESIEHYDAVAKKFSELYKNWKFEKNMIYDLSQNGYIGY
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