NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211550_10050173

Scaffold Ga0211550_10050173


Overview

Basic Information
Taxon OID3300020453 Open in IMG/M
Scaffold IDGa0211550_10050173 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2000
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_149
CoordinatesLat. (o)34.0491Long. (o)-49.8315Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008210Metagenome / Metatranscriptome337Y
F066837Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211550_100501732F066837GGAGMAENETDRSVEIKDMLDSIIAGNNADAQQQFNDQMASRTGEALDALKQDTAASVFGKAVDPNMEPQGVALDDALVDIDQTTGMPVEGETNGEDI
Ga0211550_100501734F008210AGGAMAVTVNNLKLTQVQGVVSVRGTAATGTIALATTLKKSTETQSSPAANIKGLHWTLSSGASAKVQRNSVVLFELHESGSLDFYGFAENSENTSDIEVVIAGGAGGTVIVDCAKVSGYGSQQHQDAPLDTNDSGNVYDGGSLG
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