Scaffold Ga0211550_10029323

Overview

Basic Information

• Taxon OID: 3300020453
• Scaffold ID: Ga0211550_10029323
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2667
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_149
• Coordinates
  • Lat. (^o): 34.0491
  • Long. (^o): -49.8315
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F045677	Metagenome	152	N
F048238	Metagenome	148	Y
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211550_100293234	F056529	GAG	MATKHGNRVYIQVLLEPFRGELFMQEASSQGVKPSALIRQLVYDYLAENTEEQAYCDALVNDKQKWQDAVDARLEGRAKNRRSKASQSEQDIDASNEPM
Ga0211550_100293235	F006772	N/A	MERLNKAIQLATTADLQRAAMFLEGAREVRKGSRRQRTNARSSQATAWKKKVDESITW
Ga0211550_100293236	F048238	N/A	MGTKSVHLQYCQIEDENFPLAITRFTSFDLDDKPLSVEQVTYESNMDYMERQIINALRCNVEVSILTTTPIHEFKRLHHIFNSDK
Ga0211550_100293237	F045677	N/A	MKEIKTLLPEELIERLSAEAKEKGLHRSELIRERLSQPPNHFGLTTSDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELFSPKHGN