Scaffold Ga0211545_10180304

Overview

Basic Information

• Taxon OID: 3300020452
• Scaffold ID: Ga0211545_10180304
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 978
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Fussvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.6906
  • Long. (^o): -16.8555
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024137	Metagenome / Metatranscriptome	207	Y
F031926	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_101803041	F031926	AGGAG	MSLNCTISNIQFDYAFNDAVRKASKSVSGEATTFQNGIPNQTVLVFKTICCLPDEEINTRVIAEWYFKLFGVAISTTSTVRNMSRLSDYGFLDMVDNPHGKSHKYTWIKLTQSGRKLQKLFIGSASDWK
Ga0211545_101803042	F024137	AGGA	MLNKKKTKLTTKLSTKVIMIVAEAVCKVWKYGRSKYNGVSDFDYHITDLRRQYPNQTVYHYAVQELPFYCKTNEVDDEYERTSSIKIGDCNIRYTFDRLVKAIDVKPQNVEHLFGDPRVPMITDLITQTKIRHNKPTSLRVLNFERKETNVVKLHNK