Scaffold Ga0211545_10159102

Overview

Basic Information

• Taxon OID: 3300020452
• Scaffold ID: Ga0211545_10159102
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1050
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.6906
  • Long. (^o): -16.8555
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F002768	Metagenome / Metatranscriptome	531	Y
F035491	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_101591021	F000993	AGGA	MSKLHHTKYKENYKKYILGTIETGINDEPLKTDQEKINYIFDRFNSEYGFMINRVGKYKAMSEWLSGLALDIEYYNYKIVKLAKVMGSLDTDSTYKAEQKIINNYFDFMANIILGFEPKEVK
Ga0211545_101591023	F035491	GGAGG	MNHLRTLPTWQLRAMVKALTLPVSSFLNTDEDNERLEQAQIVLYERRFKNSQPIKMEVK
Ga0211545_101591025	F002768	GAG	MKNSWWKLTIEDYPNYKPNDIDLEHIAECIKQGYDNGQLIQKDEVDDEE