Scaffold Ga0211545_10027769

Overview

Basic Information

• Taxon OID: 3300020452
• Scaffold ID: Ga0211545_10027769
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2818
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.6906
  • Long. (^o): -16.8555
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_100277692	F004990	GGA	MNGDPKKPCKICGEGADIKEGNIYYCCDHYSLYVLGKPMSQIEKELNGQDKIF
Ga0211545_100277693	F001839	GAG	MDKIKYFEKIDKDLINNRALNSHEKLIYVICKSFENAPRGCRISHKYLMLRTGIKTVPTLVRCLDRLTMFGCLARKQIDNGTCHYVFDKKTMQEYIQHNLNKRRRISLSKNRHNRNLNTALSSPNVINIGKVIK
Ga0211545_100277694	F011253	N/A	LAGGVPKLKDRSIDIQNIIKKMVKSKSFPYSNAVNKIKKDRKGYFQAKDIKQKSKSLSTDRFQQYLKDIQENDTD
Ga0211545_100277695	F004629	AGGA	MIPTKLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFLMIDRQYGIGKDKDSYKGEDKPKMKIRLNGEQLQIYEFCILLMVKGSEKDRDIIGLRNFPFKRSFRELRKFFMPDSHEKVRQAYYKALLELLKIYNKHGYKYICK