Scaffold Ga0211545_10001375

Overview

Basic Information

• Taxon OID: 3300020452
• Scaffold ID: Ga0211545_10001375
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15270
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.6906
  • Long. (^o): -16.8555
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004370	Metagenome / Metatranscriptome	441	Y
F012239	Metagenome	282	Y
F052947	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_1000137511	F004370	N/A	MYKVRKINFGWYKRRYGILLENLPPLKQKLLLNNRHMKWLDSDTQAFEVIFKVEDMNGHEKNVNKAIWNPFRETFTTLKELEKDADLIDWNCGICKVPIKSRMDSKKVENFVCNKCSKAHNSRNKSVDGRIIDTSIKFTKHCKHLLKKEQREFMSYAKRSSKR
Ga0211545_100013754	F012239	GAG	MLIDNKFELEIPTHISFTLYSNDYIDGLIISRVKHECKNESNNKNEFTLSLERFLGAIRTSAFLRAELSKTLNQELLPNPNFKPNSIFFLQSIINRLPNLTKITFKISNDKIFSRLVKVDGNREIVSFHFNIIEGTFDLTKLLDREQLDNFNKRFMDVGIMKNKYLERSAYFYIKATVLFDILADLDEAQILEAFDVITAVDPKIEEDDPILLVKTDYTPY
Ga0211545_100013758	F052947	N/A	MRAQFLEKLVNKYPNDYQLGQAVRRYYMLRQNKMAKEECEETVLKETFSFN