Scaffold Ga0211545

Basic Information
Taxon OID	3300020452 Open in IMG/M
Scaffold ID	Ga0211545_10001363 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020452 Open in IMG/M

Scaffold ID

Ga0211545_10001363 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15332
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (21.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15332

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (21.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_152
Coordinates	Lat. (^o)	43.6906	Long. (^o)	-16.8555	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_152

Coordinates

Lat. (^o)

43.6906

Long. (^o)

-16.8555

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F013783	Metagenome / Metatranscriptome	268	Y
F017499	Metagenome / Metatranscriptome	240	Y
F024797	Metagenome / Metatranscriptome	204	Y
F051263	Metagenome / Metatranscriptome	144	Y
F064641	Metagenome / Metatranscriptome	128	Y
F096215	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_1000136321	F064641	N/A	MDSQETNDENAIRHYKGTVKQFKQMFDDLADGKDTNAYNSPIRQGYDVHPTRDEDIKSPHWEEGYEDDETQNENHIPPFKNFLK
Ga0211545_1000136323	F051263	N/A	MSISNFEDFNLNESHADFNPAAMKERLKRREQQNIERFRAAQDRVDNYAITYYKYRIQLDKIDLEKLKVLTQIHKLQQSKK
Ga0211545_1000136325	F024797	N/A	MSEFFRTQMGRKLIDGDIPNLVNVLERIATQLERKNKLDEKKFLLEERIQRLTIKEAKKN
Ga0211545_1000136326	F008425	AGAAG	MPKKDITYKQFVAHMDKGNKVYMKKPRSWQKCWFWWEDKKDKWFLNKAYDKREDGKVIPEKSVWITAKQMESHLDFMVRQGYKYNIDE
Ga0211545_100013633	F017499	N/A	MSRYNSRMHGVTNEVYVDLNWGFDHVLGYWYDIIETRNGEENIVEEWNSGMGGSRGKMLEFLIKYNLPEEHRSMVGLDMQF
Ga0211545_1000136337	F013783	AGTAG	LILEAITFKLALDFFKFLKKNRITATSIKVDFFDRIKHEYIDFADVAAMEAWYNKNYIPLNNCSLGDLCSIQIFLAESDTYNFTTEYKAIDVTGGLQLTTGSAYDRQRNKGRQVFIDRQKQLITNAVKDYVKYWSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFITSRDTSQFPYSDVKIEEFPPN
Ga0211545_100013636	F096215	N/A	MVKFETGEKVKWTQEMTCVPHPEGKTDRKGNVLPVFRDKEFTGTIVNACYDNRYTVRPDGTTTPKGLESYYDKMVPASKLEKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211545_10001363

Overview

Ecosystem & Geography

Associated Families

Sequences