Scaffold Ga0211545_10000233

Overview

Basic Information

• Taxon OID: 3300020452
• Scaffold ID: Ga0211545_10000233
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36451
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.6906
  • Long. (^o): -16.8555
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F056630	Metagenome / Metatranscriptome	137	Y
F105240	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_1000023310	F004606	N/A	MKAHRIFDKGQIVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMKFIKQHFFDMNFRHVFENRARKMILKAKDYKTIKSLEERLNEKDRERFYVVVESVMCTKTKVSLSKLFEKVQFYMISKNLKEIKEISARPFFKGPLSLDSVKEFDARFKKGFYDKFMMSDIDIDKYLNSLS
Ga0211545_1000023312	F017335	N/A	MDIRSLTLKNKLTIEDTGEQYFDLTAPSFTYITDQGIKALHYVMQDQVGRVDKISEIYFGTGEYIDAICIVNNIFNPFSLNEGDILVIPNLNNLDLLYRRPNPASRPNAVLAQYVNTDVQSEIDQSRVQRLIQKAKTKKDGVKAPIPPNMLQQGQDAKIYEGGKILLGANLKTRK
Ga0211545_1000023320	F048317	N/A	MIKDIYSRDITAPKYNENTLEVSDELSQLILKIENCLFTRRGDVLGAPGMGANLEDLIFSLVLSETVIANNITSQISAYCLPEQGGFNVETVVSFYSTPEVDGCLVDIFVNEIRVIGALF
Ga0211545_1000023322	F022460	AGGA	MATVKNDRTGFPSLYRATYEEGWNLKNTGYDYSKTLLNISMSKYMFKNPHLKKFLEDYLNPIMVFWVNKVKYLRIYYNFAVPKWYQKIN
Ga0211545_1000023324	F105240	N/A	MAISVTEILGTDSLSGSRLVINDNFNVLASEINSMEVYFAPSAGTITNLNNVSTEALRVGLSTVLLDINASTFDILTNVKMTGNLNLTGGGLFRNDTNPTTQNDTLAGPGMTLDIGATGAIPPYSIYRVGNSDTTNNLQIDIFNGSIGQELFLIYAESNTGTVRFNGVSNNLVLTGAGSNLDLTALGQSVHLLCIDNGSGVGVWYVVGGTGYTVS
Ga0211545_100002336	F056630	N/A	MQKIKTEDLSKTEVIEKTYYQWIKGDDSGLVITIKEEDDQWIYFNEGGRLSKDLKSEYIQELDSDIAGEFVETKPSGIDPLNVSVTPEIKNENANVPQIDTPSPIRVLFNKQKKNNKVKLLLEFPVNIPQKDVYKLMSTSFDKTEVNDVLQSFILDQLSEDEILSCLHNSVQSLIESKYKGE
Ga0211545_100002338	F018962	N/A	MIKIILEPARNGVIKKVVDDNHGGGREHFTSTDVYESGEGDKNKLNYVKRFFFDLCDDLGLDVGSKFNSEVLNIKTDWGTHYEPTKKDIDQKIKKLKSELELLEEWKNI
Ga0211545_100002339	F008190	GAG	MEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNTSTTIFYVLGSLTTETVGGIKEYVSTLSDKPITFKIYHSPDIIVNGTAELFDDIIEFE