Basic Information | |
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Taxon OID | 3300020452 Open in IMG/M |
Scaffold ID | Ga0211545_10000163 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 42254 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (84.62%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_152 | |||||||
Coordinates | Lat. (o) | 43.6906 | Long. (o) | -16.8555 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F054086 | Metagenome / Metatranscriptome | 140 | N |
F074004 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211545_100001632 | F074004 | GGAG | MANNVYSTLQFEKGNTEAEREFLRIFEFIETFDERGLEFADFFLTNQEIVDEEFMEDWIGPRNAVVTKFMGTEVEIKSSWISPHKFFEGLLEHLRNTDSDVVLSMQYEDEFLNFCGVYVNDKQIEESGGWFKTRFDELNDPDLDFLEYVEDIQIEWLDELC |
Ga0211545_1000016333 | F054086 | GGAG | MGEDQLEVTIREAQNGWVVELNREGETMEYIFTRPNPAINLVRKVMKGEVDPFNEGENDE |
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