NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211545_10000163

Scaffold Ga0211545_10000163


Overview

Basic Information
Taxon OID3300020452 Open in IMG/M
Scaffold IDGa0211545_10000163 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42254
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.6906Long. (o)-16.8555Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054086Metagenome / Metatranscriptome140N
F074004Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211545_100001632F074004GGAGMANNVYSTLQFEKGNTEAEREFLRIFEFIETFDERGLEFADFFLTNQEIVDEEFMEDWIGPRNAVVTKFMGTEVEIKSSWISPHKFFEGLLEHLRNTDSDVVLSMQYEDEFLNFCGVYVNDKQIEESGGWFKTRFDELNDPDLDFLEYVEDIQIEWLDELC
Ga0211545_1000016333F054086GGAGMGEDQLEVTIREAQNGWVVELNREGETMEYIFTRPNPAINLVRKVMKGEVDPFNEGENDE

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