Scaffold Ga0211545

Basic Information
Taxon OID	3300020452 Open in IMG/M
Scaffold ID	Ga0211545_10000136 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020452 Open in IMG/M

Scaffold ID

Ga0211545_10000136 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45213
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (24.66%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

45213

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (24.66%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_152
Coordinates	Lat. (^o)	43.6906	Long. (^o)	-16.8555	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_152

Coordinates

Lat. (^o)

43.6906

Long. (^o)

-16.8555

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F009608	Metagenome / Metatranscriptome	315	Y
F013325	Metagenome / Metatranscriptome	272	Y
F024830	Metagenome / Metatranscriptome	204	Y
F038691	Metagenome / Metatranscriptome	165	Y
F059026	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_1000013619	F009608	N/A	MKYIKPLNEGRPMFQDTPNEFAYLDFNAWAYKNRGKIKKELKGIKDGTQFFIKLRDLWQQWANKEAKEWSYLHSTDLAKKDFGRALAVLLKGDDLIIKRSTNKLTDLK
Ga0211545_1000013641	F059026	N/A	MEHIKDYKLFKESLQIDLITERFSSSILRDFASQDGLKSRWSGNLAKDMQKFANLAIDKISDSDFTTTTPAAYWKGPDAKDPNKVGFFVDDDKNFIKWAKANKKYLPGALDLKNISKYGVVLSVVRGGVGMWSGFAMDRGSTYSRHRKGADDRYGVLAKDYETRSLYNGWDGAPAPKVTRKNLIDAATRVYVLDLNSLRDKYDVSGLKSDRANSKMGATALKTAKEIKDENRKRYTAILQDKAAMTDIDKAVRDSIEMLNQHISDALDKGEMDQYGNFVIGKSPRGGSVSIKDGANAIRNMLDDYQRYKDYERQDKDAKADGREDNYYAREVKAYAKRLTDYAKKVKAKNYAW
Ga0211545_1000013642	F038691	AGTAG	MGFHKRHIDNEQVLRLYEDGGINRIREWYTKGVDALITETGLASRVGHVISDDEWTQMGTVRQDEEIFKLIRQEYGTPVVKK
Ga0211545_1000013643	F013325	N/A	MAKTIKMENAVHPHDTKEGQQELANELPPRKMSEIIADKRAALKKNEDLLRDLQTNEYDIPVGSAKLYKQIMKFLEKEADWGHTTATGLIMLYSNMKEQQPVTREKDWDGNIKLRGTSITIFWSMITSMKGKGFFAARDFVEMMAAFGSDLSKVVGKVHEDNQALRENHAEMAKLDQEVNHPDVILDVAIDEYQKMEEELHELMDEVDPVVENV
Ga0211545_1000013670	F024830	AGAAG	VANTPIIPGVPTPISGDPKCALTLCGKIIAQVDCIIVIMQGTDGCIDLQFFGKDGKPLDLTRYTSLQIMLYNEFDCTVANFWWPDVPTGCKGFLMTILQYTDSKGVVHNKGKVRICLDPACTKTSPSAIFAEILLTEAMTGGTAETSGIPCLQVAKIIASRIYENGCDDGCS
Ga0211545_1000013671	F002033	N/A	MSKFNKFFADHGIKIVLVLVLLSYFKSCGIDSEVERIKKEQRILTNEIDTLSSQIVNEEEMIFLIKTVPAWKTLRIEEISDKERISINALEEKED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211545_10000136

Overview

Ecosystem & Geography

Associated Families

Sequences