NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10149662

Scaffold Ga0211473_10149662


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10149662 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1200
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016734Metagenome / Metatranscriptome245Y
F036473Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0211473_101496622F016734N/AMNSKQQKAYDAQLDTMDLTDSQREAFDHSAKRSLIDLDTYQNTDHFSLHGYSLSRVMDDIVLAQYVDLSDDGTTIERNGIYIPLSQVQKTWRLAKVILSGPLCKFSEPGDIVCFPDDKGVKVDNISVAGHDDPLRNCLFLSETRFFGVCSALDQNDSRAE
Ga0211473_101496623F036473N/AMIVGLSNLKSILLNKVCEVKFARRNPKPGRPSTRRMLCTNNAQLLNSIEGRTVLNYDPPRQAPKYNPNQENLIVVWDILMQDYRTINCDTVDLISTLEADESFWVYINENIAPMSAGEKMAFMNT

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