Scaffold Ga0211473_10073997

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10073997
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1724
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030157	Metagenome / Metatranscriptome	186	Y
F049044	Metagenome / Metatranscriptome	147	N
F051469	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_100739971	F030157	N/A	ITVDYISDVSAEVTHSTASAATAGLKLSMDAIQNQGVNILGHGALGNSDTEQTYMVRADALDTISSTTTVAAIQAAIRALDGLTPDKVTATISSATAGDRDMSDTQVA
Ga0211473_100739972	F049044	AGGAG	MAYSGSKVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDMSAETGDLTTGSTTAGLQMARHAFEHQGLRILAEGPLVDSDTQKTYMVRTDALDSLSSTTTKAALQAYIRTLDQSSSSFPGIAADLTGATVTETKIGILTANAVS
Ga0211473_100739974	F051469	AGGAG	MIEKFTVEINVGDVVEIGRMHLANQEVKAIEIDKWGHPVVVLESGRKRGLFNFRLKKLIPEDVERKQEPEDVVMTKKQWAEAEKKIAEVKAKQT