Basic Information | |
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Taxon OID | 3300020451 Open in IMG/M |
Scaffold ID | Ga0211473_10063966 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1854 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_150 | |||||||
Coordinates | Lat. (o) | 35.7956 | Long. (o) | -37.0998 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021557 | Metagenome | 218 | N |
F054939 | Metagenome | 139 | Y |
F064806 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211473_100639662 | F064806 | GAG | MFKFIFGIIVGFMIFKFDWIDDMSNLINDYGIKDAIIEKLQDDIDIDNLENGGESEYE |
Ga0211473_100639663 | F021557 | GAGG | MRLLLCALLITSNAIACDYESDDLIQYEGHIESVRVLDKKVYPYVEDTRICTMHIESRIKGEWYSSRGKYIFGSNVSEDEACSHAESRAKSVVIKEHIPETIRSKRNLSCDLTEVRNSCKVIYMNVEMPVLGTQRVKLKTCEE |
Ga0211473_100639664 | F054939 | GGA | MSVYTFTFIVMVCMYLAYLWGRYLTRGEIAAEVANNTLNRLEREGFIKYVINKKTGQKDFVRFE |
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