Scaffold Ga0211473_10055223

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10055223
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1998
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F013776	Metagenome / Metatranscriptome	268	Y
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_100552233	F058219	AGGAG	MSKSKKQLKKDLKYLKKHLDDNKEINQIIEHTKKIGISSEYFCEEFVFIPDGETPEECARFHDVEYLDITEFNYHHWVSNKMEDY
Ga0211473_100552236	F001479	AGGAG	MSKEMLFLCDVYDAWLSKNKLPHRCASEILYGSDTMNKLTVNQSYWLESFISTWDVIAEN
Ga0211473_100552238	F013776	GGAGG	MKEYSFTVTKTGWINVEADSIEDAEARLQENFGHYYVITETGEELSDGWESTGEVELEEECAFNDYEEDF