NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10054630

Scaffold Ga0211473_10054630


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10054630 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2008
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037423Metagenome / Metatranscriptome168Y
F073431Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211473_100546301F073431N/ASGKMKQNTDTEDTLDADLIGDVVRSYEGECENIQEEWNNHMAQTYVDYEVGDDGADGAYIRPYSAFIAKWPIDEWKRLPSNAEEVVWDSVDYINERFGTIFVPSKNDTPVIRKVREEIHLTIQVNFEHPEIAGDSYLSFPDQFNEACQKIDSVIDDRRDTWEAILTEYFKKHGQMEGGEFMNLAIAIEDGVLSSYEWDLETDGAYDESYECTARYSHYYDPEDLGLDIRVLMKILDSYDFKIQLKKQLLEAPRKEQNTQYYLDMDIKTLEQGGEAKIVTIFSINADAPDIMTGLFVELVEGEMDDEDNLNVVFNRVLAQFVNSRKPAFMQTNESIVSTWKDYLKS
Ga0211473_100546302F037423GAGMQDPDFLFSVLAMLVKKSGGKITITDTEMKNVSKGDLIGMYYEPKSGDLILKQVEKEDMLKATSMVRDDIDKAYDN
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