Scaffold Ga0211473_10025709

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10025709
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2899
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_100257093	F001993	GGA	MNSEQLRYKMKNLDELCPNRSVTNDEQFHELYSKLRDLIEDTNYNIDIVDMYTALHCAMEDFEMYA
Ga0211473_100257094	F014388	AGGAG	MSSLHHENILEECFEVASESFRVNNKLTHEQLDELISFSKGTYDAICSNAYKLFQDRCQ
Ga0211473_100257095	F004453	N/A	MDIYETNFFIMQIDFTEYELETIANAMEDYMQYDDEKLNTELLFGGLSVADRVNSIQNKIDKVFNN
Ga0211473_100257099	F004764	AGGAGG	MNFSLEQNVDILSAYHVERFTHLRDNKQYQDADAIAQEYICNGEVEDDDYKWLYVNYQFKEAN