Scaffold Ga0211473_10006615

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10006615
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5658
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000413	Metagenome / Metatranscriptome	1169	Y
F021862	Metagenome	217	Y
F028002	Metagenome / Metatranscriptome	193	Y
F042283	Metagenome	158	Y
F105865	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_1000661512	F000413	N/A	MLLDESKLAKYLWKHKALEFRYPKRKHRLDCYADEKYLMMGKLKYPTMFGRKGRMGFMELYISYKINQRMNLSRGSS
Ga0211473_1000661516	F105865	AGGAG	MKMTKKNVGLGVAIIVAIAVLGWIFKPAPAEAADVDFTFGAEKKIEANTNKMYLDSSVDLPLGITGTSGVNYSVDNSLDATFDSFELDFSKGLNDRVSLYSESDFDVNLDHTDTTVGFKVKF
Ga0211473_100066152	F021862	GAGG	MFRHIRRWFEAYKKSLVDSYEPRPTIYKLGNKRYIKKKVLNRPKGQKGPYLK
Ga0211473_100066154	F028002	AGGAGG	MKKIIDEVKKNKKAMIGVAVVVVIFAWMLIANEPAPTVE
Ga0211473_100066155	F042283	N/A	MSKEFERYLIIFLLLILIGLSGCAKKHIAADHPKQPTTLETIGKLDAIANVLGCMFDPTPCQKKSKEEMDR