Scaffold Ga0211473_10004384

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10004384
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6962
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017223	Metagenome	242	Y
F026716	Metagenome	197	Y
F066235	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_100043844	F066235	N/A	MPDEPEEDPILQEEDDELREMVERALKQSIKDKKVFKRRQDLAERISNIIAEYLDSYILLGFDFQGRHLDIKSATTPQQMEALNSFLLKYFAAEVQSIKGLNSGPDEIL
Ga0211473_100043845	F026716	GGA	MKYCKREVYAVETGDYVGKMFAVVDPKKEAIGCLILPQMENIHVPIESFDNGRNNDIIKLVEKLPKKVYSVVEAQYKENENSDNRRQQLNTPNVSYSESTVEEDEDAHGLPSK
Ga0211473_100043847	F017223	N/A	MISLPEDFVILKFFELGFYPKYNKFNNVYQCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVSGTTDKDIIKELKDHVPDAEDIVERSEDTKPNFKVATLPKDSINLSDKLQLDFYNNSSVVTAVRHLIKERRLDTAVNKPSALYVSLTDMVHKNRLVIPFFNEQDEIEFYQTRTVLNKDHKVKPKYLGKVNAEKTLFNIDRVSNDHDCVYIFEGPINAFFTKNSIAVAGITERGKSFTQRQEEQLNTTLKWYDKTWILDSQWVDQASLVKSEVLLKQGERVFIWPEKFGKRFKDFNDIAIACKIDEIKYNFIEKNTFDGIEGIVRLSEIKKYRNLVK