Scaffold Ga0211473_10004169

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10004169
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7168
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F038272	Metagenome	166	Y
F066845	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_100041692	F007343	AGGAG	MRVSDLQPAAYPQSPAVENPNSDSDSLFTNEFNKNSFIEENGDVEIVWNERYKFWAVPAFAEGRRIYSEAKQRYCDQHGSE
Ga0211473_100041693	F038272	AGGA	MKRNEAKLELFKVNRNIEKKGVEYANELGQYNKSIVMRELQLLWDKKKTLVKIINS
Ga0211473_100041695	F066845	AGGAG	MMNNRKKAIAMHNASKKRFADIFTGCLAHGTLKQTQKKLATFKLTKEKK