Scaffold Ga0211473_10003391

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10003391
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7911
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_1000339111	F018622	GAG	LEFVNQRMIIQKAALDSLLLDNVCEIRFARRIVKPGQAATRRMLCTKSLSLLNSVNGRISLNYFPPKGPPKPYLGPDHLAVAWDILMQDYRNINMNQCDLIQEIPANDDFWVYFNENIYPMSAAQKRNFMNS
Ga0211473_1000339112	F018815	N/A	MNVSLEKVTDFLKPFLLQDIIIKTDKKVLKRGKLKIFQVKQYYINLTLEFNGADKSYEIPYPYETSYHNNIGILNYHLSSFVPLKQINKVKCLDSSSKSKLYNNLVYILTSEDDII
Ga0211473_100033917	F008105	N/A	MNFFQLQNKLFYSKKTEAGELDAEGEQAFVPFLFNRWLSFYNQNMCIFTNETLNKFSTIFENKQDTYKLYYNIIPRLKWQKIKYIKKKKKEEESEINLALIAKNKNISIRELKQYLNE