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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020451 Open in IMG/M |
| Scaffold ID | Ga0211473_10001797 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10821 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (31.25%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_150 | |||||||
| Coordinates | Lat. (o) | 35.7956 | Long. (o) | -37.0998 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006793 | Metagenome | 364 | Y |
| F012584 | Metagenome | 279 | Y |
| F016820 | Metagenome | 244 | Y |
| F018189 | Metagenome | 236 | Y |
| F024809 | Metagenome | 204 | Y |
| F047122 | Metagenome | 150 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211473_1000179712 | F047122 | GAGG | VKCPKCNKKAKASATRFIEYIHAQRRIRTCECGFKFTTYERIEEDKQDLGKHSKEKKKEYYRKVLLELIEDLEGRTYLNKEKEEKFKIWEGV |
| Ga0211473_1000179714 | F006793 | N/A | MTNFRSTNEEKEQRINYAADQLAKGERSMVIVKKLAKKYSVSPQQARDYVREGRKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARGEENLKEQGKATGGMVKMVGMLTTIDQVGSWDDAYDNHLFKNFSEAKKKVKHSDLDALDNELPEGEIPF |
| Ga0211473_1000179716 | F016820 | N/A | MTKKEFSYVVIFSSGERVEEIHGVYKDVEGACYGARSALTTLFPKHGDEVKIIRCEIISTEEAKNKFEDSKPKDLFEKCDDGYCPLPTQQAS |
| Ga0211473_1000179717 | F012584 | N/A | MYQKNKMKLRPVLPENVFKLTEDSLPTQSDVDPHGKIMVYRKDVGWSIIQFTEATQFLAMKHTHWTFTPETP |
| Ga0211473_1000179727 | F024809 | N/A | MNYSQKVLFDDWISKCPIEGVFIDKPVSQVKMDDGEFGYLIQVFLIINKEDWEQNQSPPGISENFEKS |
| Ga0211473_1000179731 | F018189 | GGAG | MELTKEQMEKVIYELECNYNSKIFDDENLIEIINLFKKYLNGGKTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |