NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10000566

Scaffold Ga0211473_10000566


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10000566 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19480
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (52.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005533Metagenome / Metatranscriptome397Y
F007173Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0211473_1000056622F007173N/AMKLRTMLKAIISREKLMEYIHEDRDLLMGLQDDLSDMLYATGKFSITLDEVVQNFMPFIPLYLIENVDEIKKTFSNRITDDEHLFIFDRDLTPNEITINVEWLD
Ga0211473_1000056628F005533GGAGMDYTKNETALLNLISNINKQFYYIGEENDKVAPIDVKKFTQYCVDFIDSLEVDYSED

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