Scaffold Ga0211641_10349993

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10349993
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 716
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_103499931	F006383	GGAGG	MQIRDKMWKVQQPGTILRARHSARRGQLALVLTRAYHEIKGTGTRGNHYVKMQMISTGERIEESLTNANNCWDIVSEP
Ga0211641_103499932	F021674	GAGG	MERETYNSRLKSNPEDIPAGSLLRIKKHCRKNNIVKQNGELAILVERPHGTYISHDVLFPSGRRTIFIPMNWEVVSYANKR
Ga0211641_103499933	F069451	N/A	VRIKKSAITAWSTLWFVDLAENKSPLLVMELVNRRHWKVMKPDGNTFFVEEESLTKRMW