Scaffold Ga0211641_10292205

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10292205
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 797
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F005611	Metagenome	395	Y
F079205	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_102922052	F079205	GAGG	MTQRYEVQTKFIYGFENVWRDEDDKLIYFDTREQAIKELRENVDDWNNDSNTTSKYYYNDYRVRRVNDTTR
Ga0211641_102922053	F005611	AGGGGG	MKTYKITAGETIYAVYETEIKAENKKQAEEIASEISAYDYKSNDWSNSAGDFAIEEIEEVKK
Ga0211641_102922054	F001086	AGAAGG	MKKKCTGWAIVTTMEREDGTWYTETITDVDKETAQSVDTYLTEYCENEEGDK