Scaffold Ga0211641_10258025

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10258025
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 857
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F010001	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_102580252	F010001	AGG	MDKEDNLEYLKAQIGNLEVQNADYQQIVKELSDKLKLYENKYGTVFQPAKNTSDQK
Ga0211641_102580253	F000464	N/A	MKLSPKNQQKFIQFKSLPPYDNDTGLSMADDEEFWPVMGILFAIWGAWTGIIHFIDWLTFDAVPWWAEPFTVAPAIFIMLMNEKYDSLNPLHWWPMFWGYKAKLPEEDRIMIRPLDTDRIVEQHGGPLNVYIMDYEHIKFRRKKDAVIFGLKYF