Scaffold Ga0211641_10070129

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10070129
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1819
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013821	Metagenome	268	Y
F037942	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_100701294	F013821	AGGA	MATNSEAKQASVRGVTSTTATFNEDWLALFNARSIGAGTYNERLLAYINNKLGSSHTDLNKALQALAVDQGDANYSSMGTFTP
Ga0211641_100701295	F037942	N/A	MTQQSLRQKSCRDASNTNGTYNEDWMKTFEEAGITTGTFSERMLAYTNAQGSSWDNAQWDVSSWGKGPFINVNQSMAQLGKQNGTTVP