NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211641_10058112

Scaffold Ga0211641_10058112


Overview

Basic Information
Taxon OID3300020450 Open in IMG/M
Scaffold IDGa0211641_10058112 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2026
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9554Long. (o)-100.6925Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023483Metagenome / Metatranscriptome210Y
F028800Metagenome / Metatranscriptome190Y
F060424Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211641_100581124F028800N/AMNKIEIIDGHDGFEREVTGTYDLDGNNVYEWELYTYDGLTSIYFKNGEADFSLEDEDDCEQLGLTEDEGERIFDEILDFVNDNGYDFIGEEFE
Ga0211641_100581125F023483N/AMNKLHLSIADVTKIYGEALERETGMPINNLANVFDYDGYELNYDSLADKITIIIKGAYVQFEMDDCDITCINNNDGTGWQLYDYQDAFIDDVVYPTTLNCE
Ga0211641_100581126F060424N/AMKRKEILSTIEETYNKIYAFTDRMGDEALNILDEHTDRYNLNDEDAILMEAICDDYDPTNLSKETLSCLLDAYKDALSDLRCE

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