Basic Information | |
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Taxon OID | 3300020450 Open in IMG/M |
Scaffold ID | Ga0211641_10058112 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2026 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_111 | |||||||
Coordinates | Lat. (o) | -16.9554 | Long. (o) | -100.6925 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F023483 | Metagenome / Metatranscriptome | 210 | Y |
F028800 | Metagenome / Metatranscriptome | 190 | Y |
F060424 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211641_100581124 | F028800 | N/A | MNKIEIIDGHDGFEREVTGTYDLDGNNVYEWELYTYDGLTSIYFKNGEADFSLEDEDDCEQLGLTEDEGERIFDEILDFVNDNGYDFIGEEFE |
Ga0211641_100581125 | F023483 | N/A | MNKLHLSIADVTKIYGEALERETGMPINNLANVFDYDGYELNYDSLADKITIIIKGAYVQFEMDDCDITCINNNDGTGWQLYDYQDAFIDDVVYPTTLNCE |
Ga0211641_100581126 | F060424 | N/A | MKRKEILSTIEETYNKIYAFTDRMGDEALNILDEHTDRYNLNDEDAILMEAICDDYDPTNLSKETLSCLLDAYKDALSDLRCE |
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