Scaffold Ga0211641_10020308

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10020308
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3698
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073567	Metagenome / Metatranscriptome	120	Y
F077194	Metagenome / Metatranscriptome	117	Y
F078600	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_100203082	F073567	N/A	MNNLTKKQNQEITNLYEMLSKGWHYTNHPMHYKFMQHHNELPDYKS
Ga0211641_100203084	F078600	N/A	MYNPNNPSNWTWSKAFAEMEKTVTQAELTQQVVNHLADYPGKSHGEYVKLSKDKQDNLYEILGQIL
Ga0211641_100203086	F077194	N/A	MKTKLYPNQTLTVLDYSAGEIHQYNDIDYEKITNSEELDDFITGLGYDLTEVEYMFHTDKTIYNLTNNL