Scaffold Ga0211641_10017256

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10017256
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4046
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F077246	Metagenome / Metatranscriptome	117	N
F091977	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_100172562	F052566	GAGG	MIHEHVYKRKDGGETWCYGTIEWDSNFSVVCQDEYKDGIWTGDLGFEPENWDQVCEYLEEYYDPKIEQLETC
Ga0211641_100172563	F050370	AGAAG	MNYIHEVYIPCAVGRQTFEDAKTLLTNIHGGCTAYNGVGHWNDEGTNTDGTTNSVQMREEVWIVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEISVRFHYDT
Ga0211641_100172568	F077246	AGG	MGKLSHNELVVTPESWDDIQEYIETFEHKAYVTVLALMVHNYTLHQFSQMGGYAFSAWKQEYLKDVN
Ga0211641_100172569	F091977	N/A	MTLTEKKIQRMIDNYQFMQTCFVPYNDKTPAEQMTQLYHFLRDQMEDVERIDRQEASNRRHKLNGKEYAGKAGH