Scaffold Ga0211641_10013330

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211641_10013330

Scaffold Ga0211641_10013330

Overview

Basic Information
Taxon OID	3300020450 Open in IMG/M
Scaffold ID	Ga0211641_10013330 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4688
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_111
Coordinates	Lat. (^o)	-16.9554	Long. (^o)	-100.6925	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003333	Metagenome / Metatranscriptome	493	Y
F003928	Metagenome	461	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_1001333013	F003333	N/A	LDLYRTFRILSMGQKQEQEEKQKKKIERYNVLRKGKVIFWNVSESELFDIMEDLAVECYYNQTLTSNDITYEPYIEEPLNG
Ga0211641_100133309	F003928	N/A	MFTFTTTAYNPQGQVEETETQFDSWEATEICLGMSQDYGYAETLDQWGKHYGEYGHRPNALGQRVY

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.