Scaffold Ga0211641_10009142

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211641_10009142

Scaffold Ga0211641_10009142

Overview

Basic Information
Taxon OID	3300020450 Open in IMG/M
Scaffold ID	Ga0211641_10009142 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5796
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_111
Coordinates	Lat. (^o)	-16.9554	Long. (^o)	-100.6925	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072373	Metagenome	121	Y
F085580	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_1000914212	F072373	GGAG	MNWTLKANQKYWNKAYQWYMKESTLSAKQVSDFIKVNPFVALTIENKAIQLKELEE
Ga0211641_1000914213	F085580	AGGAG	MIIRSNSTFSLVQTITDSILLVVNGTISQPVLRCWHILQKNEAIKEFERITNGN

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