Scaffold Ga0211641_10002964

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10002964
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10933
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015078	Metagenome	257	Y
F057293	Metagenome	136	Y
F091884	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_1000296411	F015078	GAGG	MTTSTEPKFTCNVNYQFDISLQDLKDLFCTMGQGSTYWATDVTIGNIKVEEDEEGVTYIKSGQDYECEGCCIWLKELTLDSPITVEDMEDDTHLFKVQDVLTTIEKIISGKTKLNKHDCCQIFEAFATNDLGLIDAGIADSILQIMTYDSLVYG
Ga0211641_1000296418	F091884	N/A	MTTKLKKSTKKVEYKKQDRQVIAFCFIDHGKYTWSIGYDPNIVHATRCVRKAKRDFGLKGWQVIPVTIFDIEDCENWAFDGMTLVDCDKQDKESEDYKEGRFYREFAGCPSLKKIEDLEVVS
Ga0211641_1000296421	F057293	GAGG	MRKHTITVYTNDEYSLYEILREVRSEIDRKVFDRNNIRQRKFSGTWEEEVTSSSPLADRYGYRYETVAKWESVVVPNKEFIQFQKETK