Scaffold Ga0211641

Basic Information
Taxon OID	3300020450 Open in IMG/M
Scaffold ID	Ga0211641_10002277 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020450 Open in IMG/M

Scaffold ID

Ga0211641_10002277 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12552
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (93.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12552

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (93.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_111
Coordinates	Lat. (^o)	-16.9554	Long. (^o)	-100.6925	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_111

Coordinates

Lat. (^o)

-16.9554

Long. (^o)

-100.6925

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F067202	Metagenome	126	Y
F090997	Metagenome	108	Y
F094531	Metagenome / Metatranscriptome	106	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_1000227715	F096197	AGGAG	VTNFTKTQLKNLRAEMQSLLLAHPFEETIDIPIDKISIDSCNYNGGEATYKVRVLLDGAETKEQKDLTQMASMFNLDTTKIKNYVDHKSVQYRMSLVGYKTKARKMPWIAQDLLSGNEYKLTNQQARQWFMKTEEIVS
Ga0211641_1000227716	F094531	AGGAG	MITEDAIPAYNKQFKQLVGAKILDFKMQQCEFDPHQYWPTFKMKLASDTFSLVLSQDEEGNGGGFAFIEDVKEEK
Ga0211641_1000227718	F010471	GAGG	MIQLTLATNNKAHPEYSDSQIAETLGVLPMWVAEYVGNDNDADIVKFMTDRYGCGRLYEFKGTINEEGDYVSEHEEDADLPYMGRMITKHGYAYFYDYAIVALPLPNGKHFITRMD
Ga0211641_1000227721	F090997	AGGAGG	MKIRVLAEETVYKECFVDVPEHILEYSKDKLSKTYLKNAIHNWLSKNGSDFKWADYDFSFDPYTWEEVQDND
Ga0211641_1000227725	F067202	AGGAG	MNTPYQKRQFKDIVIAAEDLDCHTIDTIADVIHEHIIDIGLATSKTLVGFSWRLDVRVSTSNES
Ga0211641_1000227726	F028349	AGG	MKVKTYHKNGKAVQFLGYSDIDAFNAAKVVMGEVGDVGYFRPRLGAGEDIYDWVYVKETTDEDLQRVLGK
Ga0211641_1000227727	F020815	GAGG	MRLYMNKQGEWVGTQAEAKKIKADMVEVPTDKPNLLKWLNTFTGAIDDAAKEVIDNKPNPGTVARKPHKYDFWDNIRDVAENCSITDFNIALAVFMDRVHDIAEKQKETQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211641_10002277

Overview

Ecosystem & Geography

Associated Families

Sequences