Scaffold Ga0211641_10000361

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211641_10000361

Scaffold Ga0211641_10000361

Overview

Basic Information
Taxon OID	3300020450 Open in IMG/M
Scaffold ID	Ga0211641_10000361 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	32298
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (77.03%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_111
Coordinates	Lat. (^o)	-16.9554	Long. (^o)	-100.6925	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077929	Metagenome	117	N
F099417	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_1000036154	F077929	GGA	MKWILVLISMNLYADGSADHFVFTNTMYHSVEECQAIAQINMKNIEDIAIREFNGPAKVYCFREDNFIKYMNQKPPEKTPKVQL
Ga0211641_1000036168	F099417	AGGAG	MVNQKEIDLLVYGHIYEWVKPKVWNKNLNDIDWKNVKDTVYMDALGAKTKYWKNYDHFTKIFNDVANDFIADADVSIFDNGV

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