Scaffold Ga0211641_10000003

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10000003
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 284371
• Total Scaffold Genes: 327
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 238 (72.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040108	Metagenome	162	Y
F089156	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_10000003105	F040108	AGGAG	MYKVFQIKINKEVHNFVNSNDRGHVGAEEKYPIYEAYMRLRHSFRDEIKFKDTDFQHFTHVASVKKDAGLVDGSGDSWQVRDLEDVFAVLNGRYYDEDTETDPVFDAHVSDYKMKTVTRKDGEVVTFRDMHSLSVGDIVQDVDNGTFHIVASFGFEDITDQVKNYVEQSLEVA
Ga0211641_10000003174	F089156	N/A	MLIIQFDDYIDPIDFPVEIIQSFKHNTYLIDCELSEYDVISSISKQYPVISMQSNEDCAYIDVYERHTTSYTTVSPEDTLAPLIEKLDLLAVQEPKILCFSWQMDRNYIVDYRIEQLLKAGHLVVCAGGNRDLPVIDISPVAVDGVIRVGGNKHNGYYQNWIDIYDVTDPSEPNSNKAVHNICTKMVHKQLELDYELGYYSDSSIRSAPWPLRLAQTPSKQTKYYEFNPVSNLRYCAGEHLIPVRPGDNVSMLYGGCELENFVEARYVDLGVELPRGITFNLQSGWLYGTFKFKQDMFHRFQVDINGQLFEYHLISCDAENKLEYNDVKEKYYNRPYNAPPFTMREYWVPMARPIKLLEPGDPFIRTYNLNDLHLYREYE