Scaffold Ga0211642_10019990

Overview

Basic Information

• Taxon OID: 3300020449
• Scaffold ID: Ga0211642_10019990
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3062
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_110
• Coordinates
  • Lat. (^o): -1.8191
  • Long. (^o): -84.6284
  • Depth (m): 380

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027810	Metagenome / Metatranscriptome	193	N
F032623	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211642_100199901	F027810	N/A	DAFNDLAKSHDAHVKEVERLQKELDELKNLKLVNQDGELLLECKIGDKHHQALLEVGLNTILEKFVNE
Ga0211642_100199904	F032623	N/A	MSEEFIWVIIYLVPISVVVWTLGMWATHEDYKKEHNIKGWSDKKMNAKQIILTSIVSTIVGTTGWLGGVYYGSVNMLDSIYDNVENELDIFESKLESVSTKKIESQLEQLKIKVLNKVPSQQDIIDMSAQVDGINERIVMLASETQSLISDLKYSVREDLNKTTTDLTNTVESSITAQSDSVKKEIGKLYDKVDVLYKELTEVTALIDKAKENFIGKRVFK