Scaffold Ga0211638_10162068

Overview

Basic Information

• Taxon OID: 3300020448
• Scaffold ID: Ga0211638_10162068
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1018
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.24
  • Long. (^o): -129.4851
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F011410	Metagenome	291	Y
F015532	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211638_101620681	F015532	GAGG	MTLIKENKGVRKEIPDRMMSATFALPIDERRVVGILDYIASDTGITPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNV
Ga0211638_101620682	F011410	AGG	MKDFKFKLEWYISDLLVWIVFTISIGLMIASIVTMYNMYGIIETMWSEIQQVKETNISLYQFIEEHRNDFD
Ga0211638_101620685	F003020	N/A	IPYNKLTKGRKMPDISKFKSVSVSMDTHDKLMSLAQNRFEVPVSVQKVIEFLLEKEMKKRNGRSNGKSRR