Scaffold Ga0211638

Basic Information
Taxon OID	3300020448 Open in IMG/M
Scaffold ID	Ga0211638_10002591 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020448 Open in IMG/M

Scaffold ID

Ga0211638_10002591 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7954
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (59.26%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7954

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (59.26%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_112
Coordinates	Lat. (^o)	-23.24	Long. (^o)	-129.4851	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_112

Coordinates

Lat. (^o)

-23.24

Long. (^o)

-129.4851

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018189	Metagenome	236	Y
F024809	Metagenome	204	Y
F025520	Metagenome	201	Y
F038719	Metagenome	165	Y
F074765	Metagenome	119	Y
F092069	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211638_1000259114	F074765	N/A	MPKTATPKQTKITVSKLSHRLSRNGWISYNCELRKGRTCLAAIDQEGVGGDERVAWNNTEHYLLIHHWIMDTQRDFWRSYENENINYMVELGHKTMTDAIKEKLDLAKKFNLWEKLAKKKPKSWKEAREIQQKLGFFDDMVGSWTTVYVENKLADKYYAE
Ga0211638_1000259116	F038719	N/A	MDSKTRNKILHRCEILTYMGDDGISCIYDQLPDDELMSDCGWVLDKAHDDLDNFQLGLTRKIINKAAARAATKDMWS
Ga0211638_1000259119	F024809	GGAG	MNYSQKILFDDWIDKCPIEGVFVDEPVSQVRMDDGEFGYLIKVFLTINKKDWEQNQENPGNQEIFKNS
Ga0211638_100025912	F025520	N/A	MENFDEKFYVVRSYSYIKNVSKFLDNNFLEELKNSDGTLKPHITDLQNEVPYYGKPCIKCTIPTLFIEIEYKTSDGLYLIEHDVFLYEEDYPTLKDLEAYQEKISYGFASQITQEIKDIVEAFHNGYGCICLESEGY
Ga0211638_1000259122	F092069	N/A	MTTVIFEYNGKSKEIPIDEIKSVNDVADAYATLGLKSKKPFKSSEKEFVKRRLYYFLPNGKYHSFLSNKNHKYAVCCTEKDTKIGGHYTDDYARAKDIAENLNRKMNNHEYGYRKWVVVDIKGGK
Ga0211638_1000259127	F018189	N/A	MELSKKQMEKVIEELETSYNSKTFDDENLIEIINLFKKYLNGGETK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211638_10002591

Overview

Ecosystem & Geography

Associated Families

Sequences